Creamy, lightly sweet, and perfectly spiced pumpkin cheesecake bites with an almond flour crust. Bake or chill for a cozy, shareable dessert that's both indulgent and wholesome.
Introduction
Healthy Pumpkin Cheesecake Bites make me smile every single time, and I think you’re about to be just as obsessed. I was testing these for a cozy movie night, and the first batch vanished before the opening credits. They’re creamy, lightly sweet, and perfectly spiced, kind of like my favorite cheesecake cottage cheese smoothie but in bite form. Chill them for a no fuss dessert, or bake them if you love that classic cheesecake set. Ready to whip up a pan that tastes like fall?
What Is Healthy Pumpkin Cheesecake Bites?
Healthy Pumpkin Cheesecake Bites are small cheesecake squares made with real pumpkin puree, warm spices, and a tender crust you can keep gluten friendly or go classic. Think soft, velvety texture with a gentle pumpkin vibe, similar to the cozy flavor in my pumpkin protein pancakes, only richer and creamier. They slice clean, travel well, and look so cute on a dessert tray.
Ingredients Overview for Healthy Pumpkin Cheesecake Bites
Here’s what you will need to pull off Healthy Pumpkin Cheesecake Bites, along with easy swaps to match your pantry and mood.

For the crust
- Almond flour: Gives a nutty, tender base that stays crisp. Substitute crushed graham crackers if you want a more classic flavor.
- Coconut oil: Helps the crust hold together and adds light sweetness. Melted butter works too.
- Maple syrup: Adds moisture and caramel notes. Honey or agave also work.
- Cinnamon: Warms up the crust. Pumpkin pie spice is a fine swap.
- Pinch of salt: Balances the sweetness so the bites taste bright, not flat.
For the filling
- Cream cheese: Go for brick style, softened until silky. Light cream cheese works beautifully for Healthy Pumpkin Cheesecake Bites.
- Greek yogurt: Adds protein and a fresh tang that keeps the filling light. Sour cream also works if that’s what you have.
- Pumpkin puree: Use pure pumpkin, not pie filling. It brings color, fiber, and that cozy fall flavor.
- Maple syrup: Natural sweetness with depth. You can mix with a little brown sugar if you like.
- Eggs: Bind the filling and help it set when baked. For a no bake version, you’ll skip the eggs and add a little gelatin.
- Vanilla: Rounds out the spices and pumpkin.
- Pumpkin pie spice: The classic blend of cinnamon, ginger, nutmeg, and cloves. You can mix your own if needed.
- Cornstarch or arrowroot: A touch keeps the texture smooth and helps the bars slice neatly.
- Pinch of salt: Makes every flavor pop.
Optional toppings
- Light whipped cream: Soft clouds on top look cute on a tray.
- Crushed pecans: For crunch and a buttery finish.
- Cinnamon sugar dust: A tiny sprinkle before serving gives café vibes.
Step by Step Instructions: How To Make Healthy Pumpkin Cheesecake Bites
Prep the pan
Line an 8 inch square baking pan with parchment so the edges hang over for easy lifting. This little trick makes slicing Healthy Pumpkin Cheesecake Bites so much easier later.
Mix the crust
Stir almond flour, cinnamon, and salt in a bowl. Add melted coconut oil and maple syrup. It should feel like damp sand. If it seems dry, add a teaspoon more oil. Press it firmly into the pan. I use the bottom of a measuring cup to press it evenly so the Healthy Pumpkin Cheesecake Bites bake with a sturdy base.
Parbake or chill the crust
If baking, slide the pan into a 350°F oven for 8 minutes until fragrant. If going no bake, chill the crust for 20 minutes so it firms up. Either way, you get a crust that supports those creamy Healthy Pumpkin Cheesecake Bites without crumbling.
Make the filling
Beat the cream cheese until silky, then blend in yogurt, pumpkin, maple, vanilla, and pumpkin pie spice. The mixture should be thick but pourable. If you like a cheesecake flavor with a fruity twist, you’ll love how the spice plays with the tang, similar to the creamy balance in my blueberry cottage cheese smoothie
Add eggs for baked version
For baked bars, beat in the eggs one at a time on low speed until just combined. Try not to whip in too much air. That way the Healthy Pumpkin Cheesecake Bites set gently with fewer cracks.
Pour and smooth
Pour the filling over the crust and smooth the top with a spatula. Give the pan a gentle tap on the counter to pop tiny bubbles. This tiny step keeps Healthy Pumpkin Cheesecake Bites looking pretty.

Bake low and slow
Bake at 325°F for 22 to 28 minutes, until the edges are set and the center has a slight jiggle. If the top looks wet, give it another 2 minutes. Pull the pan and cool at room temperature. Then refrigerate at least 3 hours. The chill helps Healthy Pumpkin Cheesecake Bites slice into sharp edged squares.
No bake option
Skip the eggs. Warm 2 teaspoons powdered gelatin in 2 tablespoons water until dissolved, then whisk into the filling. Pour over the chilled crust and refrigerate 4 hours. The clean, creamy set is lovely, and the no bake Healthy Pumpkin Cheesecake Bites taste extra light.
Slice and finish
Lift the slab onto a board using the parchment. Trim the edges if you want super tidy sides. Slice into small squares. Add a dot of whipped cream or a pecan half. Dust with cinnamon. Serve the Healthy Pumpkin Cheesecake Bites chilled so each bite is cool, velvety, and just sweet enough.
Storage and make ahead
Keep leftovers covered in the fridge for up to 5 days. For longer storage, freeze the squares on a tray until firm, then pack in a container with parchment between layers. Thaw in the fridge. Meal prep fans will love grabbing Healthy Pumpkin Cheesecake Bites straight from the freezer for a ready to go dessert.
Crust
- 1 1/2 cups almond flour
- 3 tbsp coconut oil melted
- 2 tbsp maple syrup
- 1/2 tsp cinnamon
- 1/8 tsp salt pinch
Filling
- 8 oz cream cheese softened, brick style
- 1/2 cup Greek yogurt 2% or full fat
- 3/4 cup pumpkin puree not pumpkin pie filling
- 1/3 cup maple syrup
- 2 large eggs
- 1 tsp vanilla extract
- 1 1/2 tsp pumpkin pie spice
- 1 tbsp cornstarch or arrowroot
- 1/8 tsp salt pinch
Optional Toppings
- light whipped cream for garnish
- crushed pecans
- cinnamon sugar for dusting
Line an 8-inch square pan with parchment, leaving overhang for easy lifting.
Mix almond flour, cinnamon, salt, coconut oil, and maple syrup until sandy. Press into pan firmly.
Parbake at 350°F (175°C) for 8 minutes or chill 20 minutes for no-bake version.
Beat cream cheese until smooth. Add yogurt, pumpkin, maple syrup, vanilla, and pumpkin pie spice. Blend until silky.
For baked version: mix in eggs one at a time. For no-bake: bloom gelatin and whisk in.
Pour filling over crust, smooth top, tap pan to release bubbles.
Bake at 325°F (165°C) for 22–28 minutes until edges set and center jiggles. Cool, then chill at least 3 hours.
No-bake version: refrigerate at least 4 hours until set.
Lift out with parchment, slice into 16 squares. Garnish with whipped cream, pecans, or cinnamon sugar.
Calories: 142kcalCarbohydrates: 12gProtein: 4gFat: 9gSaturated Fat: 4gPolyunsaturated Fat: 1gMonounsaturated Fat: 2gCholesterol: 36mgSodium: 90mgPotassium: 70mgFiber: 1gSugar: 8gVitamin A: 35IUVitamin C: 2mgCalcium: 4mgIron: 3mg
Store in fridge up to 5 days or freeze up to 2 months. For clean slices, warm knife under hot water and wipe dry between cuts.
Serving Suggestions
Serve Healthy Pumpkin Cheesecake Bites on a big board with fresh berries, apple slices, and toasted pecans. Add a small bowl of cinnamon yogurt for dipping if you’re feeling playful. They sit nicely beside coffee or chai, and they shine on a holiday dessert spread with brownies and fruit. For a brunch vibe, plate them with mini quiches and a leafy salad. For date night, drizzle a little warm maple on top right before serving so the Healthy Pumpkin Cheesecake Bites feel extra special without much fuss.

Tips For The Perfect Healthy Pumpkin Cheesecake Bites
- Soften slowly: Bring cream cheese to room temp for a smooth, lump free filling that blends in minutes.
- Keep the crust tight: Press the crust firmly with a flat bottom cup so slices hold together.
- Mind the jiggle: Pull baked bars when the center still wiggles slightly. They finish as they cool.
- Chill time matters: Refrigerate long enough so the squares cut cleanly and the spice blooms.
- Spice it your way: Add extra cinnamon or a pinch of cardamom if you like a bolder bite.
- Sweetness control: Taste before baking and add a spoon of maple if you want more sweetness.
- Neat slices: Warm a knife under hot water, wipe dry, and cut straight down for tidy edges.
- Gluten free swap: Stick with almond flour or use gluten free graham crackers for friends who need it.
- Protein boost: Choose 2 percent or full fat Greek yogurt for a creamier texture and satisfying bite.
- No bake success: Bloom the gelatin fully so no grainy bits sneak into your Healthy Pumpkin Cheesecake Bites.
FAQs Section
Can I make Healthy Pumpkin Cheesecake Bites without eggs?
Yes, you can. Use the no bake method with gelatin or a vegetarian gel. The texture stays creamy and sliceable, and the flavor of pumpkin and spice still shines.
Do I need a water bath for Healthy Pumpkin Cheesecake Bites?
You don’t. Because the bars are shallow, low heat and a gentle bake work well. Cooling slowly on the counter, then chilling, keeps the tops smooth and pretty.
Can I make Healthy Pumpkin Cheesecake Bites ahead for a party?
Absolutely. Prepare them the day before so they have time to chill. Slice, garnish, and place on a tray right before guests arrive. They hold well and taste even better on day two.
What crust is best for Healthy Pumpkin Cheesecake Bites?
Both almond flour and graham cracker are great. Almond flour gives a nutty, gluten free base, while graham crackers bring that nostalgic cheesecake taste. Pick the one that matches your crowd or split the batch and try both.
Why You’ll Love These Little Bites
You’ll love Healthy Pumpkin Cheesecake Bites because they’re creamy, spiced just right, and easy to share. The bites feel special, yet they’re simple to mix together on a busy weeknight. They chill nicely, travel well, and keep their shape on a buffet. You can tweak the sweetness, skip the oven, or go classic bake. Every square tastes like fall in a tiny package that satisfies without weighing you down.
More Recipe Ideas
- Pumpkin Greek Yogurt Parfait Cups: creamy layers with granola crunch for a quick breakfast that keeps you going.
- Cinnamon Apple Oat Bars: soft, chewy squares sweetened with maple and packed with fruit.
- No Bake Pumpkin Protein Balls: freezer friendly, spiced nibbles with oats and nut butter.
- Maple Pecan Mini Cheesecakes: sweet, nutty bites with a buttery crust for party trays.
- Chai Spiced Banana Bread Muffins: tender muffins with warm spices and a cozy aroma.
Behind The Scenes
When I first tested Healthy Pumpkin Cheesecake Bites, I baked them too hot and the center puffed. I lowered the temp, added a bit of cornstarch, and suddenly the texture turned silky. I also tried both almond flour and graham cracker crusts, and my friends split right down the middle, which made me laugh. I kept the maple light so the spices could glow. If you want more kitchen inspo, I stash step by step snaps and flavor ideas on my Pinterest at https://www.pinterest.com/howtocookall/. These little bars now live in my freezer year round.